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    1700008K24Rik RIKEN cDNA 1700008K24 gene [ Mus musculus (house mouse) ]

    Gene ID: 69311, updated on 22-Oct-2024

    Summary

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    Official Symbol
    1700008K24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700008K24 geneprovided by MGI
    Primary source
    MGI:MGI:1916561
    See related
    Ensembl:ENSMUSG00000101012 AllianceGenome:MGI:1916561
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 232.4) See more
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    Genomic context

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    See 1700008K24Rik in Genome Data Viewer
    Location:
    17 C; 17 24.78 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (49419292..49420561, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (49112264..49113533, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42758 Neighboring gene predicted gene, 24071 Neighboring gene STARR-seq mESC enhancer starr_42759 Neighboring gene STARR-seq mESC enhancer starr_42760 Neighboring gene STARR-seq mESC enhancer starr_42761 Neighboring gene STARR-seq mESC enhancer starr_42762 Neighboring gene STARR-seq mESC enhancer starr_42763 Neighboring gene leucine rich repeat and fibronectin type III domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_42766 Neighboring gene STARR-seq mESC enhancer starr_42768 Neighboring gene predicted gene, 30475 Neighboring gene antigenic determinant of rec-A protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    2. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038141.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC154247, CF104157
      Related
      ENSMUST00000186479.3

    2. NR_038142.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) includes an additional splice site in the 5' region, compared to variant 1.
      Source sequence(s)
      AC154247, CF982619
      Related
      ENSMUST00000185974.8

    3. NR_038143.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) includes an additional splice site in the 5' region, compared to variant 1.
      Source sequence(s)
      AC154247
      Related
      ENSMUST00000187177.8

    4. NR_038144.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site compared to variant 1.
      Source sequence(s)
      AC154247
      Related
      ENSMUST00000188649.3

    5. NR_038145.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) uses an alternate splice site compared to variant 1.
      Source sequence(s)
      AC154247
      Related
      ENSMUST00000190269.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      49419292..49420561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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