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    Tex9 testis expressed gene 9 [ Mus musculus (house mouse) ]

    Gene ID: 21778, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tex9provided by MGI
    Official Full Name
    testis expressed gene 9provided by MGI
    Primary source
    MGI:MGI:1201610
    See related
    Ensembl:ENSMUSG00000090626 AllianceGenome:MGI:1201610
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    tsec-1; Gm19407
    Summary
    Predicted to be located in centriolar satellite. Is expressed in several structures, including metanephros and testis. Orthologous to human TEX9 (testis expressed 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 7.8), liver E14 (RPKM 5.5) and 19 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tex9 in Genome Data Viewer
    Location:
    9 D; 9 40.08 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (72365337..72418226, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (72458055..72510945, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene ribosomal protein L7A pseudogene Neighboring gene STARR-seq mESC enhancer starr_24594 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:72238180-72238457 Neighboring gene predicted gene 27230 Neighboring gene cDNA sequence BC065403 Neighboring gene STARR-positive B cell enhancer mm9_chr9:72286185-72286486 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:72297295-72297404 Neighboring gene STARR-positive B cell enhancer ABC_E5084 Neighboring gene meiosis-specific nuclear structural protein 1 Neighboring gene predicted gene, 33004 Neighboring gene RIKEN cDNA 4930509E16 gene Neighboring gene STARR-positive B cell enhancer ABC_E8299 Neighboring gene STARR-positive B cell enhancer ABC_E5085 Neighboring gene regulatory factor X, 7 Neighboring gene 60S ribosomal protein L38 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and analysis of novel cDNAs specifically expressed in adult mouse testes. Chen L, et al. Biochem Biophys Res Commun, 1997 Nov 17. PMID 9388464
    2. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. Tamplin OJ, et al. BMC Genomics, 2008 Oct 30. PMID 18973680, Free PMC Article
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in centriolar satellite ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 9
    Names
    testis-expressed sequence 9 protein
    testis-specifically expressed protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009359.4 → NP_033385.2  testis-expressed protein 9

      See identical proteins and their annotated locations for NP_033385.2

      Status: VALIDATED

      Source sequence(s)
      AC111135, AK008505, BY240124
      Consensus CDS
      CCDS40685.1
      UniProtKB/Swiss-Prot
      B2RUA2, O54764, Q9D845
      UniProtKB/TrEMBL
      B7ZND8
      Related
      ENSMUSP00000139026.2, ENSMUST00000184125.8
      Conserved Domains (1) summary
      COG1196
      Location:26 → 369
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      72365337..72418226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030244237.2 → XP_030100097.1  testis-expressed protein 9 isoform X2

      UniProtKB/TrEMBL
      B7ZND8
      Conserved Domains (1) summary
      COG1196
      Location:41 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_006511021.5 → XP_006511084.1  testis-expressed protein 9 isoform X3

      UniProtKB/TrEMBL
      B7ZND9

    3. XM_006511019.5 → XP_006511082.1  testis-expressed protein 9 isoform X1

      UniProtKB/TrEMBL
      B7ZND9
      Conserved Domains (1) summary
      COG1196
      Location:41 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_006511022.5 → XP_006511085.1  testis-expressed protein 9 isoform X4

      UniProtKB/TrEMBL
      B7ZND9
      Related
      ENSMUSP00000139386.2, ENSMUST00000183574.8

    5. XM_036154837.1 → XP_036010730.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      Z4YJY6
      Related
      ENSMUSP00000082467.6, ENSMUST00000085358.12
      Conserved Domains (1) summary
      COG1196
      Location:13 → 170
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    6. XM_030244238.1 → XP_030100098.1  testis-expressed protein 9 isoform X6

      UniProtKB/TrEMBL
      V9GX60
      Related
      ENSMUSP00000138999.2, ENSMUST00000184831.8
      Conserved Domains (1) summary
      COG1196
      Location:2 → 184
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    7. XM_036154834.1 → XP_036010727.1  testis-expressed protein 9 isoform X5

      Conserved Domains (1) summary
      TIGR02168
      Location:2 → 187
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    8. XM_036154835.1 → XP_036010728.1  testis-expressed protein 9 isoform X6

      UniProtKB/TrEMBL
      V9GX60
      Conserved Domains (1) summary
      COG1196
      Location:2 → 184
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    9. XM_036154836.1 → XP_036010729.1  testis-expressed protein 9 isoform X6

      UniProtKB/TrEMBL
      V9GX60
      Conserved Domains (1) summary
      COG1196
      Location:2 → 184
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    10. XM_036154838.1 → XP_036010731.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      Z4YJY6
      Conserved Domains (1) summary
      COG1196
      Location:13 → 170
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_001778850.3 RNA Sequence

    2. XR_004935380.1 RNA Sequence

    3. XR_004935383.1 RNA Sequence

    4. XR_004935381.1 RNA Sequence

    5. XR_004935382.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D845.1 GenPept UniProtKB/Swiss-Prot:Q9D845

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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