U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    6330407A03Rik RIKEN cDNA 6330407A03 gene [ Mus musculus (house mouse) ]

    Gene ID: 70720, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    6330407A03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6330407A03 geneprovided by MGI
    Primary source
    MGI:MGI:1917970
    See related
    AllianceGenome:MGI:1917970
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 6330407A03Rik in Genome Data Viewer
    Location:
    4 A1; 4 2.07 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (3714964..3716813)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (3714964..3716813)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene trimethylguanosine synthase 1 Neighboring gene STARR-positive B cell enhancer ABC_E4609 Neighboring gene STARR-positive B cell enhancer mm9_chr4:3574269-3574569 Neighboring gene STARR-positive B cell enhancer ABC_E6150 Neighboring gene RIKEN cDNA 2210414B05 gene Neighboring gene STARR-seq mESC enhancer starr_09415 Neighboring gene predicted gene, 42250 Neighboring gene LYN proto-oncogene, Src family tyrosine kinase Neighboring gene STARR-positive B cell enhancer mm9_chr4:3651863-3652164 Neighboring gene STARR-seq mESC enhancer starr_09416 Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 22781

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028126.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL772401

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      3714964..3716813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.