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    Tedc1 tubulin epsilon and delta complex 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690422, updated on 27-Nov-2024

    Summary

    Symbol
    Tedc1provided by RGD
    Full Name
    tubulin epsilon and delta complex 1provided by RGD
    Primary source
    RGD:1596085
    See related
    EnsemblRapid:ENSRNOG00000070355 AllianceGenome:RGD:1596085
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in positive regulation of smoothened signaling pathway. Predicted to be located in centriole and cilium. Orthologous to human TEDC1 (tubulin epsilon and delta complex 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 28.0), Testes (RPKM 24.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tedc1 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (138056029..138068899)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (132234764..132245164)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137967119..137976324)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich protein 2 Neighboring gene cysteine rich protein 1 Neighboring gene transmembrane protein 121 Neighboring gene immunoglobulin heavy constant epsilon-like Neighboring gene immunoglobulin heavy constant epsilon-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    tubulin epsilon and delta complex protein 1
    Names
    uncharacterized protein C14orf80 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399144.1NP_001386073.1  tubulin epsilon and delta complex protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A8I5ZZB2, A6KBZ3
      Related
      ENSRNOP00000085075.1, ENSRNOT00000101385.2
      Conserved Domains (2) summary
      pfam14970
      Location:41221
      DUF4509; Domain of unknown function (DUF4509)
      pfam14971
      Location:266418
      DUF4510; Domain of unknown function (DUF4510)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      138056029..138068899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039113425.2XP_038969353.1  tubulin epsilon and delta complex protein 1 isoform X1

      Related
      ENSRNOP00000103807.1, ENSRNOT00000149882.1
      Conserved Domains (2) summary
      pfam14970
      Location:42217
      DUF4509; Domain of unknown function (DUF4509)
      pfam14971
      Location:262414
      DUF4510; Domain of unknown function (DUF4510)
    2. XM_039113426.2XP_038969354.1  tubulin epsilon and delta complex protein 1 isoform X2

      Conserved Domains (2) summary
      pfam14970
      Location:41212
      DUF4509; Domain of unknown function (DUF4509)
      pfam14971
      Location:257409
      DUF4510; Domain of unknown function (DUF4510)