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    Tmem121 transmembrane protein 121 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691678, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tmem121provided by RGD
    Official Full Name
    transmembrane protein 121provided by RGD
    Primary source
    RGD:1597216
    See related
    EnsemblRapid:ENSRNOG00000005174 AllianceGenome:RGD:1597216
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM121 (transmembrane protein 121). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 46.4), Muscle (RPKM 9.9) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem121 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (138083239..138086848)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (132262182..132265797)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137994675..138002897)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene cysteine rich protein 1 Neighboring gene tubulin epsilon and delta complex 1 Neighboring gene immunoglobulin heavy constant epsilon-like Neighboring gene immunoglobulin heavy constant epsilon-like Neighboring gene Ig gamma-2B chain C region-like Neighboring gene small nucleolar RNA SNORA40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 121

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398696.1 → NP_001385625.1  transmembrane protein 121

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      D3ZMR5
      Related
      ENSRNOP00000109559.1, ENSRNOT00000122810.1
      Conserved Domains (1) summary
      pfam14997
      Location:73 → 267
      CECR6_TMEM121; CECR6/TMEM121 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      138083239..138086848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006240674.5 → XP_006240736.1  transmembrane protein 121 isoform X1

      See identical proteins and their annotated locations for XP_006240736.1

      UniProtKB/TrEMBL
      D3ZMR5
      Related
      ENSRNOP00000006872.1, ENSRNOT00000006872.4
      Conserved Domains (1) summary
      pfam14997
      Location:73 → 267
      CECR6_TMEM121; CECR6/TMEM121 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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