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    F25F8.1 B box-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172104, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F25F8.1
    Official Full Name
    B box-type domain-containing protein
    Primary source
    WormBase:WBGene00017795
    Locus tag
    CELE_F25F8.1
    See related
    AllianceGenome:WB:WBGene00017795
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F25F8.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    11
    Sequence:
    Chromosome: I; NC_003279.8 (4884903..4895516)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glutamate-gated chloride channel subunit beta Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DUF4708 domain-containing protein Neighboring gene Acetylcholine receptor subunit alpha-type unc-38 Neighboring gene Protein-S-isoprenylcysteine O-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 'Edgetic' perturbation of a C. elegans BCL2 ortholog. Dreze M, et al. Nat Methods, 2009 Nov. PMID 19855391, Free PMC Article
    2. UNC-83 coordinates kinesin-1 and dynein activities at the nuclear envelope during nuclear migration. Fridolfsson HN, et al. Dev Biol, 2010 Feb 15. PMID 20005871, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    B box-type domain-containing protein
    NP_491469.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4884903..4895516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059068.8 → NP_491469.2  B box-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491469.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      P91272
      Conserved Domains (2) summary
      cd05819
      Location:373 → 423
      NHL; NHL repeat [structural motif]
      cl18310
      Location:341 → 550
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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