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    Y39A1A.3 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [ Caenorhabditis elegans ]

    Gene ID: 176479, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y39A1A.3
    Official Full Name
    Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
    Primary source
    WormBase:WBGene00012643
    Locus tag
    CELE_Y39A1A.3
    See related
    AllianceGenome:WB:WBGene00012643
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human ZNRD2 (zinc ribbon domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y39A1A.3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (10595258..10596487, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ShKT domain-containing protein Neighboring gene rRNA methyltransferase 1, mitochondrial Neighboring gene Ectopic P granules protein 6 Neighboring gene Reverse transcriptase domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
    NP_499334.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      10595258..10596487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066933.4 → NP_499334.2  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499334.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEN7
      Conserved Domains (2) summary
      PRK12495
      Location:41 → 210
      PRK12495; hypothetical protein; Provisional
      pfam06677
      Location:60 → 97
      Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
    Nucleotide Protein
    Heading Accession and Version

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