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    C16D9.6 N-acetylgalactosaminide beta-1,3-galactosyltransferase [ Caenorhabditis elegans ]

    Gene ID: 182687, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C16D9.6
    Official Full Name
    N-acetylgalactosaminide beta-1,3-galactosyltransferase
    Primary source
    WormBase:WBGene00015861
    Locus tag
    CELE_C16D9.6
    See related
    AllianceGenome:WB:WBGene00015861
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Tn polyagglutination syndrome and hemolytic-uremic syndrome. Orthologous to human C1GALT1C1 (C1GALT1 specific chaperone 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C16D9.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (8248111..8250308, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Tyr Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    N-acetylgalactosaminide beta-1,3-galactosyltransferase
    NP_505126.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      8248111..8250308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072725.4 → NP_505126.2  N-acetylgalactosaminide beta-1,3-galactosyltransferase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505126.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22900
      Conserved Domains (1) summary
      cl21608
      Location:98 → 250
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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