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    cey-1 CSD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174690, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cey-1
    Official Full Name
    CSD domain-containing protein
    Primary source
    WormBase:WBGene00000472
    Locus tag
    CELE_F33A8.3
    See related
    AllianceGenome:WB:WBGene00000472
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be involved in regulation of gene expression. Located in endoplasmic reticulum. Is expressed in germ cell; germ line; muscle cell; pharynx; and somatic cell. Orthologous to several human genes including YBX3 (Y-box binding protein 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cey-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (11039348..11041206, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SXP/RAL-2 family protein Ani s 5-like cation-binding domain-containing protein Neighboring gene ncRNA Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene CTCHY-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage. Scheckel C, et al. PLoS Genet, 2012 May. PMID 22693456, Free PMC Article
    2. Repression of gene expression in the embryonic germ lineage of C. elegans. Seydoux G, et al. Nature, 1996 Aug 22. PMID 8751441
    3. Distinct requirements for somatic and germline expression of a generally expressed Caernorhabditis elegans gene. Kelly WG, et al. Genetics, 1997 May. PMID 9136012, Free PMC Article
    4. Systemic regulation of mitochondria by germline proteostasis prevents protein aggregation in the soma of C. elegans. Calculli G, et al. Sci Adv, 2021 Jun. PMID 34172445, Free PMC Article
    5. Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans. Seydoux G, et al. Development, 1994 Oct. PMID 7607073

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables nucleic acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CSD domain-containing protein
    NP_496366.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11039348..11041206 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063965.7 → NP_496366.1  CSD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496366.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O62213
      Conserved Domains (1) summary
      pfam00313
      Location:21 → 90
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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