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    Y51H7C.7 Nuclear nucleic acid-binding protein C1D [ Caenorhabditis elegans ]

    Gene ID: 173517, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y51H7C.7
    Official Full Name
    Nuclear nucleic acid-binding protein C1D
    Primary source
    WormBase:WBGene00021785
    Locus tag
    CELE_Y51H7C.7
    See related
    AllianceGenome:WB:WBGene00021785
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y51H7C.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (1402569..1403215)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene PAN-3 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Immediate early response 3-interacting protein 1 Neighboring gene Conserved oligomeric Golgi complex subunit 4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nuclear nucleic acid-binding protein C1D
    NP_493965.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1402569..1403215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061564.4 → NP_493965.1  Nuclear nucleic acid-binding protein C1D [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493965.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N3J4
    Nucleotide Protein
    Heading Accession and Version

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