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    H43E16.1 VWFA domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174101, updated on 9-Dec-2024

    Summary

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    Official Symbol
    H43E16.1
    Official Full Name
    VWFA domain-containing protein
    Primary source
    WormBase:WBGene00019273
    Locus tag
    CELE_H43E16.1
    See related
    AllianceGenome:WB:WBGene00019273
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See H43E16.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    10
    Sequence:
    Chromosome: II; NC_003280.10 (6674268..6679370)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene VWFA domain-containing protein Neighboring gene VWFA domain-containing protein Neighboring gene pseudo Neighboring gene Intraflagellar transport protein 74 homolog Neighboring gene GYF domain-containing protein gyf-1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    VWFA domain-containing protein
    NP_001343774.1
    • Confirmed by transcript evidence
    NP_495358.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6674268..6679370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062957.6 → NP_495358.1  VWFA domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495358.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N5K0
      Conserved Domains (3) summary
      PHA03307
      Location:556 → 908
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00600
      Location:76 → 260
      rad2; DNA excision repair protein (rad2)
      pfam10479
      Location:933 → 1022
      FSA_C; Fragile site-associated protein C-terminus

    2. NM_001356862.3 → NP_001343774.1  VWFA domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C343
      Conserved Domains (2) summary
      pfam01390
      Location:213 → 283
      SEA; SEA domain
      cl25496
      Location:511 → 767
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version

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