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    natc-3 Sm domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565103, updated on 9-Dec-2024

    Summary

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    Official Symbol
    natc-3
    Official Full Name
    Sm domain-containing protein
    Primary source
    WormBase:WBGene00021682
    Locus tag
    CELE_Y48G1C.9
    See related
    AllianceGenome:WB:WBGene00021682
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in cytoplasm. Predicted to be part of spliceosomal complex. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See natc-3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003279.8 (91404..92720)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Serine-threonine/tyrosine-protein kinase catalytic domain-containing protein;Tyrosine-protein kinase csk-1 Neighboring gene Myotubularin phosphatase domain-containing protein Neighboring gene HTH CENPB-type domain-containing protein Neighboring gene Chitin-binding type-2 domain-containing protein Neighboring gene Protein pid-2 Neighboring gene OTU domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Sm domain-containing protein
    NP_001379978.1
    • Partially confirmed by transcript evidence
    NP_001382272.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      91404..92720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392591.1 → NP_001379978.1  Sm domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BL76
      Conserved Domains (1) summary
      cd06168
      Location:25 → 93
      LSMD1; LSM domain containing 1

    2. NM_001395347.1 → NP_001382272.1  Sm domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D7ZEM6
    Nucleotide Protein
    Heading Accession and Version

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