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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029768.3 RefSeqGene
- Range
-
5002..314669
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001033553.3 → NP_001028725.1 cytospin-B isoform 1
See identical proteins and their annotated locations for NP_001028725.1
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC007963, AC008088
- Consensus CDS
-
CCDS32590.1
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
- Related
- ENSP00000261503.5, ENST00000261503.9
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cd21257
Location:956 → 1067
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001033554.3 → NP_001028726.1 cytospin-B isoform 4
See identical proteins and their annotated locations for NP_001028726.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains alternate exons at both the 5' and 3' ends compared to variant 1. This results in a shorter isoform (4, also known as NSP5alpha3alpha) with distinct N- and C- termini compared to isoform 1.
- Source sequence(s)
-
AC004702, AI950511, AK304186, AY816326, BC033618, BC037532, BP309862, CN361555, DC336225
- Consensus CDS
-
CCDS45628.1
- UniProtKB/TrEMBL
-
A0A7P0T9K0
- Related
- ENSP00000378896.3, ENST00000395525.7
- Conserved Domains (1) summary
-
- cl09111
Location:555 → 650
- Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
-
NM_001033555.3 → NP_001028727.1 cytospin-B isoform 2
See identical proteins and their annotated locations for NP_001028727.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate 5' terminal exon compared to variant 1. This results in a shorter isoform (2, also known as NSP5alpha3beta) with a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC008088, AK301318, AK304186, AY816327, AY816329, BP309862, CA427363, DC336225
- Consensus CDS
-
CCDS42281.1
- UniProtKB/TrEMBL
-
B4E2A4
- Related
- ENSP00000378901.2, ENST00000395530.6
- Conserved Domains (3) summary
-
- cd00014
Location:885 → 985
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam04156
Location:64 → 179
- IncA; IncA protein
- cl09111
Location:555 → 650
- Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
-
NM_001243438.2 → NP_001230367.1 cytospin-B isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains alternate exons at both the 5' and 3' ends, and uses an alternate donor splice site at the penultimate exon compared to variant 1. This results in a shorter isoform (5) with distinct N- and C- termini compared to isoform 1.
- Source sequence(s)
-
AC004702, AI950511, AK304186, BC033618, BC037532, BC050058, BP309862, CN361555, DC336225
- Consensus CDS
-
CCDS58531.1
- UniProtKB/TrEMBL
-
A0A7P0T9K0
- Related
- ENSP00000378893.2, ENST00000395522.6
- Conserved Domains (1) summary
-
- cl09111
Location:555 → 650
- Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
-
NM_001243439.2 → NP_001230368.1 cytospin-B isoform 1
See identical proteins and their annotated locations for NP_001230368.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate 5' terminal non-coding exon compared to variant 1. Variants 1 and 6 encode the same isoform (1).
- Source sequence(s)
-
AC008088, AK295093, AK301318, AK304186, AY816329, BP309862, CA427363, DA058164
- Consensus CDS
-
CCDS32590.1
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
- Related
- ENSP00000378898.4, ENST00000395527.9
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cd21257
Location:956 → 1067
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001386077.2 → NP_001373006.1 cytospin-B isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC007963, AC008088
- Consensus CDS
-
CCDS92279.1
- UniProtKB/TrEMBL
- B4DW07, J3KSG2
- Related
- ENSP00000462471.2, ENST00000581399.6
- Conserved Domains (2) summary
-
- COG1196
Location:2 → 113
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- cd21257
Location:296 → 407
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001386078.2 → NP_001373007.1 cytospin-B isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- Consensus CDS
-
CCDS92274.1
- UniProtKB/TrEMBL
-
J3KRB9
- Related
- ENSP00000461918.2, ENST00000583528.6
- Conserved Domains (2) summary
-
- COG1196
Location:142 → 277
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- cd21257
Location:462 → 573
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001386079.1 → NP_001373008.1 cytospin-B isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963
- Consensus CDS
-
CCDS92278.1
- UniProtKB/TrEMBL
- A0A7P0TAS3, J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
- Related
- ENSP00000506319.1, ENST00000681202.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:370 → 726
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
NM_001386080.1 → NP_001373009.1 cytospin-B isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- UniProtKB/TrEMBL
-
B4DIW7
- Related
-
ENST00000678651.1
- Conserved Domains (2) summary
-
- TIGR02168
Location:146 → 502
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- cd21257
Location:732 → 843
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001386081.1 → NP_001373010.1 cytospin-B isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- Consensus CDS
-
CCDS92275.1
- UniProtKB/TrEMBL
- A0A7I2V486, A0A7P0TBP2
- Related
- ENSP00000506699.1, ENST00000680019.1
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cl00030
Location:956 → 1019
- CH_SF; calponin homology (CH) domain superfamily
-
NM_001386082.1 → NP_001373011.1 cytospin-B isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- Consensus CDS
-
CCDS92276.1
- UniProtKB/TrEMBL
- A0A7I2V416, A0A7I2V451
- Related
- ENSP00000503509.1, ENST00000678019.1
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cl00030
Location:956 → 1047
- CH_SF; calponin homology (CH) domain superfamily
-
NM_001386083.2 → NP_001373012.2 cytospin-B isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- Consensus CDS
-
CCDS32590.1
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
- Related
- ENSP00000504211.1, ENST00000679255.1
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cd21257
Location:956 → 1067
- CH_CYTSB; calponin homology (CH) domain found in cytospin-B
-
NM_001386084.1 → NP_001373013.1 cytospin-B isoform 13
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
- Conserved Domains (1) summary
-
- TIGR02168
Location:378 → 734
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
NM_001386085.1 → NP_001373014.1 cytospin-B isoform 14
Status: REVIEWED
- Source sequence(s)
-
AC004702, AC005730, AC007963, AC008088
- Consensus CDS
-
CCDS92277.1
- UniProtKB/TrEMBL
- A0A7I2V451, A0A7I2YQJ3
- Related
- ENSP00000503774.1, ENST00000679048.1
- Conserved Domains (2) summary
-
- TIGR04523
Location:367 → 771
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- cl00030
Location:956 → 1028
- CH_SF; calponin homology (CH) domain superfamily
-
NM_152904.4 → NP_690868.3 cytospin-B isoform 3
See identical proteins and their annotated locations for NP_690868.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate 3' terminal exon compared to variant 1. This results in a shorter isoform (3, also known as NSP5beta3alpha) with a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC004702, AI950511, AK295093, AK304186, AY816328, BC033618, BC037532, BP309862, CN361555
- Consensus CDS
-
CCDS42280.1
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
- Related
- ENSP00000378900.3, ENST00000395529.7
- Conserved Domains (1) summary
-
- cl09111
Location:636 → 731
- Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
20009359..20319026
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047437065.1 → XP_047293021.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_017025319.2 → XP_016880808.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_017025325.2 → XP_016880814.1 cytospin-B isoform X11
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
- Related
- ENSP00000503507.1, ENST00000676570.1
- Conserved Domains (1) summary
-
- cl09111
Location:636 → 731
- Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
-
XM_047437067.1 → XP_047293023.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437069.1 → XP_047293025.1 cytospin-B isoform X6
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437064.1 → XP_047293020.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437066.1 → XP_047293022.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437063.1 → XP_047293019.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437071.1 → XP_047293027.1 cytospin-B isoform X6
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437062.1 → XP_047293018.1 cytospin-B isoform X3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437061.1 → XP_047293017.1 cytospin-B isoform X2
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437060.1 → XP_047293016.1 cytospin-B isoform X1
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_047437068.1 → XP_047293024.1 cytospin-B isoform X5
- UniProtKB/TrEMBL
-
A0A7I2V451
-
XM_047437073.1 → XP_047293029.1 cytospin-B isoform X10
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
- Related
- ENSP00000506044.1, ENST00000680604.1
-
XM_047437072.1 → XP_047293028.1 cytospin-B isoform X9
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
-
XM_017025321.2 → XP_016880810.1 cytospin-B isoform X7
- UniProtKB/TrEMBL
-
B4E2A4
-
XM_047437070.1 → XP_047293026.1 cytospin-B isoform X8
- UniProtKB/TrEMBL
-
B4E2A4
-
XM_047437075.1 → XP_047293031.1 cytospin-B isoform X13
- UniProtKB/TrEMBL
-
B4DW07
-
XM_047437074.1 → XP_047293030.1 cytospin-B isoform X12
- UniProtKB/TrEMBL
-
A0A7P0T9K0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
19958073..20267692
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054317788.1 → XP_054173763.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317790.1 → XP_054173765.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317798.1 → XP_054173773.1 cytospin-B isoform X11
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
-
XM_054317792.1 → XP_054173767.1 cytospin-B isoform X6
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317787.1 → XP_054173762.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317786.1 → XP_054173761.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317789.1 → XP_054173764.1 cytospin-B isoform X4
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317795.1 → XP_054173770.1 cytospin-B isoform X6
- UniProtKB/Swiss-Prot
- B4DHH0, B7WNS8, Q5IBP1, Q5IBP2, Q5IBP3, Q5IBP4, Q5M772, Q5M773, Q5M774, Q5M775, Q86XT8, Q8N4U4, Q8WU84, Q9HCQ3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317785.1 → XP_054173760.1 cytospin-B isoform X3
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317784.1 → XP_054173759.1 cytospin-B isoform X2
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317783.1 → XP_054173758.1 cytospin-B isoform X1
- UniProtKB/TrEMBL
-
A0A7I2V486
-
XM_054317791.1 → XP_054173766.1 cytospin-B isoform X5
- UniProtKB/TrEMBL
-
A0A7I2V451
-
XM_054317797.1 → XP_054173772.1 cytospin-B isoform X10
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
-
XM_054317796.1 → XP_054173771.1 cytospin-B isoform X9
- UniProtKB/TrEMBL
- J3KRD8, J3KS18, J3KTI9, J3QRQ9, J3QS22
-
XM_054317793.1 → XP_054173768.1 cytospin-B isoform X7
- UniProtKB/TrEMBL
-
B4E2A4
-
XM_054317794.1 → XP_054173769.1 cytospin-B isoform X8
- UniProtKB/TrEMBL
-
B4E2A4
-
XM_054317800.1 → XP_054173775.1 cytospin-B isoform X13
- UniProtKB/TrEMBL
-
B4DW07
-
XM_054317799.1 → XP_054173774.1 cytospin-B isoform X12
- UniProtKB/TrEMBL
-
A0A7P0T9K0