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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001136543.2 → NP_001130015.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region and uses an upstream start codon, compared to variant 1. Isoform b has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK298706, BX647911
- Consensus CDS
-
CCDS44218.1
- UniProtKB/Swiss-Prot
-
Q96S90
- Related
- ENSP00000404059.2, ENST00000440902.2
-
NM_212551.5 → NP_997716.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform a
See identical proteins and their annotated locations for NP_997716.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AL592424, BX647911, DA176882
- Consensus CDS
-
CCDS986.1
- UniProtKB/Swiss-Prot
- B4DQA1, Q69YX9, Q96S90
- UniProtKB/TrEMBL
-
B4DQI5
- Related
- ENSP00000357904.5, ENST00000368908.10
- Conserved Domains (1) summary
-
- cd00118
Location:42 → 84
- LysM; Lysine Motif is a small domain involved in binding peptidoglycan
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
151148496..151165902 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047420112.1 → XP_047276068.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B4DQA1, Q69YX9, Q96S90
- UniProtKB/TrEMBL
-
B4DQI5
-
XM_047420105.1 → XP_047276061.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B4DQA1, Q69YX9, Q96S90
- UniProtKB/TrEMBL
-
B4DQI5
-
XM_047420115.1 → XP_047276071.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B4DQA1, Q69YX9, Q96S90
- UniProtKB/TrEMBL
-
B4DQI5
-
XM_047420118.1 → XP_047276074.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
150272196..150289846 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054336526.1 → XP_054192501.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B4DQA1, Q69YX9, Q96S90
- UniProtKB/TrEMBL
-
B4DQI5
-
XM_054336527.1 → XP_054192502.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X3
-
XM_054336528.1 → XP_054192503.1 lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X2
RNA
-
XR_008486045.1 RNA Sequence
-
XR_008486044.1 RNA Sequence
-
XR_008486046.1 RNA Sequence