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    LINC00474 long intergenic non-protein coding RNA 474 [ Homo sapiens (human) ]

    Gene ID: 58483, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00474provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 474provided by HGNC
    Primary source
    HGNC:HGNC:23367
    See related
    Ensembl:ENSG00000204148 AllianceGenome:HGNC:23367
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C9orf27; EST-YD1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00474 in Genome Data Viewer
    Location:
    9q33.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (115888162..115925207, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (128081187..128118224, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (118650441..118687486, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902356 Neighboring gene uncharacterized LOC101928775 Neighboring gene uncharacterized LOC105376234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:118601471-118602063 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:118606386-118607368 Neighboring gene NANOG hESC enhancer GRCh37_chr9:118617928-118618429 Neighboring gene uncharacterized LOC124902258 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:118706021-118707220 Neighboring gene uncharacterized LOC105376236

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
    EBI GWAS Catalog

    General gene information

    Markers

    Clone Names

    • MGC126098, MGC126099

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024032.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB021923, AL732367, BC104240, BX116645
      Related
      ENST00000832543.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      115888162..115925207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      128081187..128118224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)