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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_033859.2 RefSeqGene
- Range
-
5043..211223
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001349253.2 → NP_001336182.1 sodium channel protein type 11 subunit alpha
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the longer transcript. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC116038, AC123903
- Consensus CDS
-
CCDS33737.1
- UniProtKB/Swiss-Prot
- A6NN05, C9JD48, C9JR31, Q68K15, Q8NDX3, Q9UHE0, Q9UHM0, Q9UI33
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
- Related
- ENSP00000307599.3, ENST00000302328.9
- Conserved Domains (4) summary
-
- cd13433
Location:1309 → 1361
- Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
- pfam00520
Location:1055 → 1317
- Ion_trans; Ion transport protein
- pfam06512
Location:828 → 1051
- Na_trans_assoc; Sodium ion transport-associated
- pfam16905
Location:1618 → 1678
- GPHH; Voltage-dependent L-type calcium channel, IQ-associated
-
NM_014139.3 → NP_054858.2 sodium channel protein type 11 subunit alpha
See identical proteins and their annotated locations for NP_054858.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC116038, AC123903
- Consensus CDS
-
CCDS33737.1
- UniProtKB/Swiss-Prot
- A6NN05, C9JD48, C9JR31, Q68K15, Q8NDX3, Q9UHE0, Q9UHM0, Q9UI33
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
- Related
- ENSP00000416757.3, ENST00000456224.7
- Conserved Domains (4) summary
-
- cd13433
Location:1309 → 1361
- Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
- pfam00520
Location:1055 → 1317
- Ion_trans; Ion transport protein
- pfam06512
Location:828 → 1051
- Na_trans_assoc; Sodium ion transport-associated
- pfam16905
Location:1618 → 1678
- GPHH; Voltage-dependent L-type calcium channel, IQ-associated
RNA
-
NR_164473.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC123903
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
38845764..39051944 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047447378.1 → XP_047303334.1 sodium channel protein type 11 subunit alpha isoform X1
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_017005650.2 → XP_016861139.1 sodium channel protein type 11 subunit alpha isoform X2
- UniProtKB/Swiss-Prot
- A6NN05, C9JD48, C9JR31, Q68K15, Q8NDX3, Q9UHE0, Q9UHM0, Q9UI33
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
- Conserved Domains (4) summary
-
- cd13433
Location:1309 → 1361
- Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
- pfam00520
Location:1055 → 1317
- Ion_trans; Ion transport protein
- pfam06512
Location:828 → 1051
- Na_trans_assoc; Sodium ion transport-associated
- pfam16905
Location:1618 → 1678
- GPHH; Voltage-dependent L-type calcium channel, IQ-associated
-
XM_017005651.2 → XP_016861140.1 sodium channel protein type 11 subunit alpha isoform X3
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_011533321.3 → XP_011531623.1 sodium channel protein type 11 subunit alpha isoform X4
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
- Conserved Domains (5) summary
-
- cd13433
Location:1088 → 1140
- Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
- pfam00520
Location:1162 → 1394
- Ion_trans; Ion transport protein
- pfam06512
Location:607 → 830
- Na_trans_assoc; Sodium ion transport-associated
- pfam16905
Location:1403 → 1457
- GPHH; Voltage-dependent L-type calcium channel, IQ-associated
- cl21478
Location:159 → 214
- ATP-synt_B; ATP synthase B/B' CF(0)
-
XM_017005653.2 → XP_016861142.1 sodium channel protein type 11 subunit alpha isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
38857981..39064106 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054345105.1 → XP_054201080.1 sodium channel protein type 11 subunit alpha isoform X1
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_054345106.1 → XP_054201081.1 sodium channel protein type 11 subunit alpha isoform X2
- UniProtKB/Swiss-Prot
- A6NN05, C9JD48, C9JR31, Q68K15, Q8NDX3, Q9UHE0, Q9UHM0, Q9UI33
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_054345107.1 → XP_054201082.1 sodium channel protein type 11 subunit alpha isoform X3
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_054345108.1 → XP_054201083.1 sodium channel protein type 11 subunit alpha isoform X4
- UniProtKB/TrEMBL
-
A0A6Q8PGN4
-
XM_054345109.1 → XP_054201084.1 sodium channel protein type 11 subunit alpha isoform X5
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001287223.1: Suppressed sequence
- Description
- NM_001287223.1: This RefSeq was removed because it is partial at the 5' end.