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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008838.3Â RefSeqGene
- Range
-
5054..286392
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1153
mRNA and Protein(s)
-
NM_000489.6 → NP_000480.3  transcriptional regulator ATRX isoform 1
See identical proteins and their annotated locations for NP_000480.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC233293, AC233305, AL138743
- Consensus CDS
-
CCDS14434.1
- UniProtKB/Swiss-Prot
- D3DTE2, P46100, P51068, Q15886, Q59FB5, Q59H31, Q5H9A2, Q5JWI4, Q7Z2J1, Q9H0Z1, Q9NTS3
- UniProtKB/TrEMBL
-
A4LAA3
- Related
- ENSP00000362441.4, ENST00000373344.11
- Conserved Domains (4) summary
-
- cd00046
Location:1588 → 1750
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:2017 → 2163
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:167 → 270
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1563 → 1889
- SNF2_N; SNF2 family N-terminal domain
-
NM_138270.5 → NP_612114.2  transcriptional regulator ATRX isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks a segment within the coding region when compared to variant 1. The translation remains in-frame, and thus results in an isoform (2) that lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AA732359, AB102641, AC233305, U72938
- Consensus CDS
-
CCDS14435.1
- UniProtKB/Swiss-Prot
-
P46100
- Related
- ENSP00000378967.3, ENST00000395603.7
- Conserved Domains (4) summary
-
- cd00046
Location:1550 → 1712
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1979 → 2125
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:129 → 232
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1525 → 1851
- SNF2_N; SNF2 family N-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11Â Reference GRCh38.p14 Primary Assembly
- Range
-
77504880..77786216 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005262156.5 → XP_005262213.2  transcriptional regulator ATRX isoform X5
- Conserved Domains (4) summary
-
- cd00046
Location:1533 → 1695
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1962 → 2108
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:112 → 215
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1508 → 1834
- SNF2_N; SNF2 family N-terminal domain
-
XM_005262157.6 → XP_005262214.2  transcriptional regulator ATRX isoform X7
- Conserved Domains (4) summary
-
- cd00046
Location:1520 → 1682
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1949 → 2095
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:128 → 231
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1495 → 1821
- SNF2_N; SNF2 family N-terminal domain
-
XM_006724666.5 → XP_006724729.1  transcriptional regulator ATRX isoform X4
- Conserved Domains (4) summary
-
- cd00046
Location:1549 → 1711
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1978 → 2124
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:128 → 231
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1524 → 1850
- SNF2_N; SNF2 family N-terminal domain
-
XM_017029604.3 → XP_016885093.1  transcriptional regulator ATRX isoform X6
-
XM_017029601.3 → XP_016885090.1  transcriptional regulator ATRX isoform X3
-
XM_005262153.6 → XP_005262210.2  transcriptional regulator ATRX isoform X1
- Conserved Domains (4) summary
-
- cd00046
Location:1587 → 1749
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:2016 → 2162
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:166 → 269
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1562 → 1888
- SNF2_N; SNF2 family N-terminal domain
-
XM_005262154.6 → XP_005262211.2  transcriptional regulator ATRX isoform X2
- Conserved Domains (4) summary
-
- cd00046
Location:1559 → 1721
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1988 → 2134
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd11726
Location:167 → 270
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1534 → 1860
- SNF2_N; SNF2 family N-terminal domain
-
XM_047442191.1 → XP_047298147.1  transcriptional regulator ATRX isoform X8
-
XM_006724668.4 → XP_006724731.1  transcriptional regulator ATRX isoform X9
- Conserved Domains (3) summary
-
- cd00046
Location:1588 → 1750
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd11726
Location:167 → 270
- ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
- pfam00176
Location:1563 → 1869
- SNF2_N; SNF2 family N-terminal domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1Â Alternate T2T-CHM13v2.0
- Range
-
75942420..76223770 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054327281.1 → XP_054183256.1  transcriptional regulator ATRX isoform X5
-
XM_054327283.1 → XP_054183258.1  transcriptional regulator ATRX isoform X7
-
XM_054327280.1 → XP_054183255.1  transcriptional regulator ATRX isoform X4
-
XM_054327282.1 → XP_054183257.1  transcriptional regulator ATRX isoform X6
-
XM_054327279.1 → XP_054183254.1  transcriptional regulator ATRX isoform X3
-
XM_054327277.1 → XP_054183252.1  transcriptional regulator ATRX isoform X1
-
XM_054327278.1 → XP_054183253.1  transcriptional regulator ATRX isoform X2
-
XM_054327284.1 → XP_054183259.1  transcriptional regulator ATRX isoform X8
-
XM_054327285.1 → XP_054183260.1  transcriptional regulator ATRX isoform X9
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_138271.1: Suppressed sequence
- Description
- NM_138271.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.