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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011642.1 RefSeqGene
- Range
-
5001..27501
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_471
mRNA and Protein(s)
-
NM_000380.4 → NP_000371.1 DNA repair protein complementing XP-A cells isoform 1
See identical proteins and their annotated locations for NP_000371.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC014965, CB155090
- Consensus CDS
-
CCDS6729.1
- UniProtKB/Swiss-Prot
- P23025, Q5T1U9, Q6LCW7, Q6LD02
- UniProtKB/TrEMBL
-
F2Z2T2
- Related
- ENSP00000364270.5, ENST00000375128.5
- Conserved Domains (1) summary
-
- TIGR00598
Location:105 → 273
- rad14; DNA repair protein
-
NM_001354975.2 → NP_001341904.1 DNA repair protein complementing XP-A cells isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL445531
- Conserved Domains (1) summary
-
- TIGR00598
Location:63 → 231
- rad14; DNA repair protein
RNA
-
NR_027302.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an additional exon in the CDS, which includes an upstream stop codon, as compared to variant 1. The transcript is a nonsense-mediated mRNA decay (NMD) candidate, so is unlikely to make a functional protein.
- Source sequence(s)
-
AI961077, AL531629, BC014965, CB155090
- Related
-
ENST00000462523.5
-
NR_149091.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445531
-
NR_149092.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445531
-
NR_149093.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445531
-
NR_149094.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL445531
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
97654398..97697340 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006717278.2 → XP_006717341.1 DNA repair protein complementing XP-A cells isoform X1
- UniProtKB/TrEMBL
-
F2Z2T2
- Conserved Domains (3) summary
-
- TIGR00598
Location:105 → 257
- rad14; DNA repair protein
- pfam01286
Location:104 → 133
- XPA_N; XPA protein N-terminal
- pfam05181
Location:135 → 186
- XPA_C; XPA protein C-terminus
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
109826339..109869281 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054363756.1 → XP_054219731.1 DNA repair protein complementing XP-A cells isoform X1
- UniProtKB/TrEMBL
-
F2Z2T2