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    LINC01592 long intergenic non-protein coding RNA 1592 [ Homo sapiens (human) ]

    Gene ID: 100505718, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01592provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1592provided by HGNC
    Primary source
    HGNC:HGNC:51557
    See related
    Ensembl:ENSG00000253658 AllianceGenome:HGNC:51557
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01592 in Genome Data Viewer
    Location:
    8q13.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (68911803..69104190, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (69340365..69532742, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (69824038..70016425, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene chromosome 8 open reading frame 34 Neighboring gene RNA, 5S ribosomal pseudogene 269 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:69655931-69656489 Neighboring gene NANOG hESC enhancer GRCh37_chr8:69671922-69672423 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69755751-69756502 Neighboring gene uncharacterized LOC107986951 Neighboring gene Sharpr-MPRA regulatory region 891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69837689-69838233 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69885119-69885678 Neighboring gene 8q13.2-q13.3 proximal HERV-mediated recombination region Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69916922-69917442 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_103601 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_103615 Neighboring gene RNA, U7 small nuclear 102 pseudogene Neighboring gene TPM4 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039986.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK055514
      Related
      ENST00000518540.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      68911803..69104190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      69340365..69532742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)