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    LINC00856 long intergenic non-protein coding RNA 856 [ Homo sapiens (human) ]

    Gene ID: 100132987, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00856provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 856provided by HGNC
    Primary source
    HGNC:HGNC:45111
    See related
    Ensembl:ENSG00000230417 AllianceGenome:HGNC:45111
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00856 in Genome Data Viewer
    Location:
    10q22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (78248625..78252645)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (79117700..79121720)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (80008382..80012402)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs2223 Neighboring gene uncharacterized LOC105378375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:79963019-79963518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:79971794-79972350 Neighboring gene VISTA enhancer hs1974 Neighboring gene uncharacterized LOC124902467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80011981-80012494 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:80015479-80016678 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80026770-80027320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80027321-80027869 Neighboring gene long intergenic non-protein coding RNA 595 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80052421-80053352 Neighboring gene uncharacterized LOC124902468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80088023-80088524

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Clone Names

    • FLJ33712

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038985.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK091031, AL731570, BM666787
      Related
      ENST00000434974.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      78248625..78252645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      79117700..79121720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)