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    Gm4117 predicted gene 4117 [ Mus musculus (house mouse) ]

    Gene ID: 100042940, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm4117provided by MGI
    Official Full Name
    predicted gene 4117provided by MGI
    Primary source
    MGI:MGI:3782293
    See related
    AllianceGenome:MGI:3782293
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm4117 in Genome Data Viewer
    Location:
    13 C3; 13 45.5 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (89881816..89938889)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (89733697..89790770)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene predicted gene, 53805 Neighboring gene STARR-seq mESC enhancer starr_35223 Neighboring gene STARR-seq mESC enhancer starr_35224 Neighboring gene high mobility group box 1 pseudogene Neighboring gene versican Neighboring gene STARR-positive B cell enhancer ABC_E8538 Neighboring gene predicted gene, 50611 Neighboring gene STARR-seq mESC enhancer starr_35226 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 4 Neighboring gene STARR-seq mESC enhancer starr_35227 Neighboring gene STARR-seq mESC enhancer starr_35228 Neighboring gene STARR-seq mESC enhancer starr_35229 Neighboring gene STARR-positive B cell enhancer mm9_chr13:90229070-90229371 Neighboring gene transmembrane protein 167 Neighboring gene predicted gene, 24507

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      89881816..89938889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003950663.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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