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    LINC02171 long intergenic non-protein coding RNA 2171 [ Homo sapiens (human) ]

    Gene ID: 100133461, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02171provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2171provided by HGNC
    Primary source
    HGNC:HGNC:53033
    See related
    Ensembl:ENSG00000250632 AllianceGenome:HGNC:53033
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02171 in Genome Data Viewer
    Location:
    4p16.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (3673593..3677855, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (3672204..3676466, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (3675320..3679582, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268461 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:3642537-3642720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3644777-3645308 Neighboring gene uncharacterized LOC105374357 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3662253-3662897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3672069-3672570 Neighboring gene Sharpr-MPRA regulatory region 9480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3685363-3685922 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3685923-3686480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3704600-3705507 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3705508-3706414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3715277-3715778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3715779-3716278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3722956-3723456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3723457-3723957 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3725286-3726088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3726892-3727693 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3730463-3731202 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:3747634-3748833 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:3748853-3749023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3750933-3751433 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:3756063-3757262 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3761649-3762182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3762717-3763250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3763251-3763784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3769817-3770334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3770527-3771212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3771899-3772584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3772585-3773270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3774643-3775328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3775329-3776013 Neighboring gene adrenoceptor alpha 2C Neighboring gene uncharacterized LOC124900651 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3782589-3783221

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034136.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AL109760, BC039423
      Related
      ENST00000508619.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      3673593..3677855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      3672204..3676466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)