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    FAM239A family with sequence similarity 239 member A [ Homo sapiens (human) ]

    Gene ID: 101930105, updated on 10-Dec-2024

    Summary

    Official Symbol
    FAM239Aprovided by HGNC
    Official Full Name
    family with sequence similarity 239 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:53414
    See related
    AllianceGenome:HGNC:53414
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See FAM239A in Genome Data Viewer
    Location:
    Xp22.33
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (3850992..3882351, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (3769033..3800392, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900487 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3747599-3748438 Neighboring gene tRNA-Ile (anticodon GAT) 1-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20648 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:3761495-3761995 Neighboring gene tRNA-Ile (anticodon GAT) 1-2 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene tRNA-Ile (anticodon GAT) 1-3 Neighboring gene family with sequence similarity 239 member C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Other Names

    • family with sequence similarity 239 member A (non-protein coding)
    • zinc finger protein 839 pseudogene

    Clone Names

    • FLJ40484

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146580.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX890604
    2. NR_146581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX890604

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      3850992..3882351 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)