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    EMBP1 embigin pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 647121, updated on 22-Oct-2024

    Summary

    Official Symbol
    EMBP1provided by HGNC
    Official Full Name
    embigin pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:38661
    See related
    Ensembl:ENSG00000291141 AllianceGenome:HGNC:38661
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in bone marrow (RPKM 11.5), lymph node (RPKM 5.5) and 17 other tissues See more
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    Genomic context

    See EMBP1 in Genome Data Viewer
    Location:
    1p11.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (121519112..121571888)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (121528484..121581270)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (121260910..121313686)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 13946 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121143016-121143604 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121143605-121144193 Neighboring gene NANOG hESC enhancer GRCh37_chr1:121161647-121162148 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121279128-121279837 Neighboring gene NANOG hESC enhancer GRCh37_chr1:121300219-121300720 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121352220-121352786 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121359023-121359588 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121358455-121359022 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121357889-121358454 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121357321-121357888 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121356755-121357320 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121356187-121356754 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121355621-121356186 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121355054-121355620 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121354487-121355053 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121353920-121354486 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121352787-121353353 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121351652-121352219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121328730-121329557 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:121359589-121360154 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121384859-121385506 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:121398537-121399115 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121408502-121409070 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121399116-121399693 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:121401311-121402098 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121407932-121408501 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121381546-121382303 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:121379186-121379881 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121409111-121410082 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121422595-121423194 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121483473-121484126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121478881-121479587 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:121479883-121480411 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:121481559-121482060 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:121482818-121483472 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121478174-121478880 Neighboring gene NANOG hESC enhancer GRCh37_chr1:121448709-121449210 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121484127-121484781 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:121484782-121485435 Neighboring gene SRGAP2 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 2798 Neighboring gene mitochondrial translational initiation factor 2 pseudogene 1 Neighboring gene uncharacterized LOC101929814 Neighboring gene uncharacterized LOC105371172

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
    EBI GWAS Catalog
    Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003955.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK128714, AL592494
      Related
      ENST00000622787.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      121519112..121571888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      121528484..121581270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)