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    CG13506 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37556, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13506provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034723
    Locus tag
    Dmel_CG13506
    See related
    AllianceGenome:FB:FBgn0034723
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    13506; CT32874; Dmel\CG13506
    Summary
    Predicted to enable axon guidance receptor activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules and synapse organization. Predicted to be active in axon; neuronal cell body; and plasma membrane. Is expressed in several structures, including adult head; adult heart; embryonic epipharynx; embryonic hypopharynx; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13506 in Genome Data Viewer
    Location:
    58D4-58D4; 2-99 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22383134..22394015)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18270639..18281520)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45327 Neighboring gene Rtf1 Neighboring gene wrapper Neighboring gene long non-coding RNA:CR44757 Neighboring gene babos Neighboring gene long non-coding RNA:CR44760 Neighboring gene uncharacterized protein Neighboring gene Ventrally-expressed protein D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of motifs that are conserved in 12 Drosophila species and regulate midline glia vs. neuron expression. Estes P, et al. Genetics, 2008 Feb. PMID 18245363, Free PMC Article
    2. Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome. Maisonhaute C, et al. Gene, 2007 May 15. PMID 17382490
    3. A Gene Expression Screen in Drosophila melanogaster Identifies Novel JAK/STAT and EGFR Targets During Oogenesis. Wittes J, et al. G3 (Bethesda), 2019 Jan 9. PMID 30385460, Free PMC Article
    4. Insight into insulin secretion from transcriptome and genetic analysis of insulin-producing cells of Drosophila. Cao J, et al. Genetics, 2014 May. PMID 24558258, Free PMC Article
    5. Functional variants identify sex-specific genes and pathways in Alzheimer's Disease. Bourquard T, et al. Nat Commun, 2023 May 13. PMID 37179358, Free PMC Article

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables axon guidance receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in synapse organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13506-PA
    CG13506-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22383134..22394015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299789.1 → NP_001286718.1  uncharacterized protein Dmel_CG13506, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286718.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W259
      Conserved Domains (5) summary
      cd00096
      Location:275 → 348
      Ig; Immunoglobulin domain
      smart00408
      Location:83 → 146
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:176 → 254
      IG_like; Immunoglobulin like
      pfam07679
      Location:258 → 349
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:176 → 239
      Ig; Immunoglobulin domain

    2. NM_137822.3 → NP_611666.2  uncharacterized protein Dmel_CG13506, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611666.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W259
      Related
      FBpp0071733
      Conserved Domains (5) summary
      cd00096
      Location:275 → 348
      Ig; Immunoglobulin domain
      smart00408
      Location:83 → 146
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:176 → 254
      IG_like; Immunoglobulin like
      pfam07679
      Location:258 → 349
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:176 → 239
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SXJ2 Q8SXJ2
    Q9W259 Q9W259

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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