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    CG7974 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38207, updated on 2-Nov-2024

    Summary

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    Official Symbol
    CG7974provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035254
    Locus tag
    Dmel_CG7974
    See related
    AllianceGenome:FB:FBgn0035254
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG7974
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Is expressed in organism. Orthologous to human C9orf78 (chromosome 9 open reading frame 78). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See CG7974 in Genome Data Viewer
    Location:
    62A10-62A10; 3-0.5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (1665138..1666594)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (1665138..1666594)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Vesicle trafficking 1 Neighboring gene uncharacterized protein Neighboring gene Serine-arginine repetitive matrix 2/3/4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L23A Neighboring gene U snoRNA host gene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel Drosophila antisense scaRNA with a predicted guide function. Tortoriello G, et al. Gene, 2009 May 1. PMID 19230845
    2. RNAi screen in Drosophila cells reveals the involvement of the Tom complex in Chlamydia infection. Derré I, et al. PLoS Pathog, 2007 Oct 26. PMID 17967059, Free PMC Article
    3. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article
    4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
    5. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG7974-PA
    CG7974-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      1665138..1666594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001274344.1 → NP_001261273.1  uncharacterized protein Dmel_CG7974, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261273.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W0A9
      Conserved Domains (1) summary
      pfam07052
      Location:113 → 214
      Hep_59; Hepatocellular carcinoma-associated antigen 59

    2. NM_139386.4 → NP_647643.1  uncharacterized protein Dmel_CG7974, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647643.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W0A9
      Related
      FBpp0072646
      Conserved Domains (1) summary
      pfam07052
      Location:113 → 214
      Hep_59; Hepatocellular carcinoma-associated antigen 59
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W0A9 Q9W0A9

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