GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: GDSL-like Lipase/Acylhydrolase superfamily protein
Primary source: TAIR:AT1G54790
Locus tag: AT1G54790
See related: Araport:AT1G54790
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T22H22.20; T22H22_20
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 6

Sequence:: Chromosome: 1; NC_003070.9 (20440979..20444066, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001198299.1

Supported by ESTs:

NM_104354.4

Supported by ESTs:

NM_202300.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: GDSL-like Lipase/Acylhydrolase superfamily protein

NP_001185228.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G05180.1).

NP_564668.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G05180.1); Has 3125 Blast hits to 3084 proteins in 113 species: Archae - 0; Bacteria - 78; Metazoa - 0; Fungi - 4; Plants - 3041; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NP_974029.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G05180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

20440979..20444066 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001198299.1 → NP_001185228.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185228.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W6D8, F4HYK6

Conserved Domains (1) summary

cd01837
Location:31 → 364

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
NM_104354.4 → NP_564668.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564668.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W8D3

Conserved Domains (1) summary

cd01837
Location:30 → 363

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
NM_202300.2 → NP_974029.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974029.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q3ECP6, Q8GXJ3, Q8LFA1, Q9ZVL5

Conserved Domains (1) summary

cd01837
Location:30 → 389

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...