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    OTU-like cysteine protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841489, updated on 18-Sep-2024

    Summary

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    Official Full Name
    OTU-like cysteine protease family protein
    Primary source
    TAIR:AT1G50670
    Locus tag
    AT1G50670
    See related
    Araport:AT1G50670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17J6.19; F17J6_19; OTU2; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (18774805..18777030, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene actin cytoskeleton-regulatory complex pan-like protein Neighboring gene ncRNA Neighboring gene AP2/B3 transcription factor family protein Neighboring gene Cystatin/monellin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333447.1
    NM_001333448.1
    NM_103949.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    OTU-like cysteine protease family protein
    NP_175482.1
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 406 Blast hits to 406 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18774805..18777030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103949.4 → NP_175482.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175482.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178W4L6, Q9LPT6
      UniProtKB/TrEMBL
      A0A384LJN6, A0A5S9WNL1
      Conserved Domains (1) summary
      COG5539
      Location:13 → 207
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

    2. NM_001333447.1 → NP_001321194.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178W4L6, Q9LPT6
      UniProtKB/TrEMBL
      A0A384LJN6, A0A5S9WNL1
      Conserved Domains (1) summary
      COG5539
      Location:13 → 207
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

    3. NM_001333448.1 → NP_001321195.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178W4L6, Q9LPT6
      UniProtKB/TrEMBL
      A0A384LJN6, A0A5S9WNL1
      Conserved Domains (1) summary
      COG5539
      Location:13 → 207
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPT6.1

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