U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zinc finger FYVE domain protein, putative (DUF1666) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843297, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    zinc finger FYVE domain protein, putative (DUF1666)
    Primary source
    TAIR:AT1G69610
    Locus tag
    AT1G69610
    See related
    Araport:AT1G69610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J1.24
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (26186713..26189568)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene zinc finger homeodomain 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosomal protein L34 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_105629.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger FYVE domain protein, putative (DUF1666)
    NP_177119.1
    • FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: N-terminal protein myristoylation, translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.1); Has 289 Blast hits to 276 proteins in 65 species: Archae - 3; Bacteria - 18; Metazoa - 43; Fungi - 27; Plants - 92; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26186713..26189568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334416.1 → NP_001323202.1  zinc finger FYVE domain protein, putative (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWD6, A0A5S9WR87, A0A654EML1
      Conserved Domains (1) summary
      pfam07891
      Location:390 → 636
      DUF1666; Protein of unknown function (DUF1666)

    2. NM_001334417.1 → NP_001323203.1  zinc finger FYVE domain protein, putative (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNA5, A0A1P8AWB9

    3. NM_105629.2 → NP_177119.1  zinc finger FYVE domain protein, putative (DUF1666) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177119.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E3U0, Q9S7U2
      Conserved Domains (1) summary
      pfam07891
      Location:389 → 635
      DUF1666; Protein of unknown function (DUF1666)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.