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    PNC1 peroxisomal adenine nucleotide carrier 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819693, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PNC1
    Official Full Name
    peroxisomal adenine nucleotide carrier 1
    Primary source
    TAIR:AT3G05290
    Locus tag
    AT3G05290
    See related
    Araport:AT3G05290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPNC1; peroxisomal adenine nucleotide carrier 1; T12H1.26; T12H1_26
    Summary
    encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
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    Genomic context

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    See PNC1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (1505831..1507835, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene filament-like protein (DUF869) Neighboring gene Integral membrane Yip1 family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene MIRO-related GTP-ase 3 Neighboring gene O-fucosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. Linka N, et al. Plant Cell, 2008 Dec. PMID 19073763, Free PMC Article
    2. Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid beta-oxidation in soybean and Arabidopsis. Arai Y, et al. Plant Cell, 2008 Dec. PMID 19073762, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111402.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ADP transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables ATP transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ATP transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables ATP transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ADP transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within ATP transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within fatty acid beta-oxidation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within indolebutyric acid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seedling development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisomal adenine nucleotide carrier 1
    NP_566251.1
    • peroxisomal adenine nucleotide carrier 1 (PNC1); CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: peroxisomal adenine nucleotide carrier 2 (TAIR:AT5G27520.1); Has 7303 Blast hits to 6606 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 2896; Fungi - 2326; Plants - 1372; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1505831..1507835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111402.5 → NP_566251.1  peroxisomal adenine nucleotide carrier 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566251.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9D8, Q9MA90
      UniProtKB/TrEMBL
      A0A178V9A1, A0A5S9X987, A0A654F5W8
      Conserved Domains (1) summary
      pfam00153
      Location:202 → 295
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MA90.1

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