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    Ribosomal protein L13 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821078, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L13 family protein
    Primary source
    TAIR:AT3G01790
    Locus tag
    AT3G01790
    See related
    Araport:AT3G01790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28J7.12; F28J7_12
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (283179..285840, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene bromodomain and extraterminal domain protein 10 Neighboring gene ARM repeat superfamily protein Neighboring gene Ribosome recycling factor Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337359.1
    NM_111045.5
    NM_180163.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal protein L13 family protein
    NP_186828.2
    • Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
    NP_850494.1
    • Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      283179..285840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180163.4 → NP_850494.1  Ribosomal protein L13 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850494.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDQ7, A0A654F4L1, Q7XA68
      Conserved Domains (1) summary
      PLN00205
      Location:16 → 205
      PLN00205; ribisomal protein L13 family protein; Provisional

    2. NM_111045.5 → NP_186828.2  Ribosomal protein L13 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186828.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDQ7, A0A654F4L1, Q7XA68
      Conserved Domains (1) summary
      PLN00205
      Location:16 → 205
      PLN00205; ribisomal protein L13 family protein; Provisional

    3. NM_001337359.1 → NP_001326281.1  Ribosomal protein L13 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNS9, Q9SGJ2
    Nucleotide Protein
    Heading Accession and Version

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