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    HSFA6B heat shock transcription factor A6B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821854, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HSFA6B
    Official Full Name
    heat shock transcription factor A6B
    Primary source
    TAIR:AT3G22830
    Locus tag
    AT3G22830
    See related
    Araport:AT3G22830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B; AT-HSFA6B; heat shock transcription factor A6B; heat shock transcription factor A6B
    Summary
    member of Heat Stress Transcription Factor (Hsf) family
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    Genomic context

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    See HSFA6B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (8078789..8081059)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene auxin canalization protein (DUF828) Neighboring gene allergen-like protein Neighboring gene Chlorophyll A-B binding family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Heat Stress Factor HSFA6b Connects ABA Signaling and ABA-Mediated Heat Responses. Huang YC, et al. Plant Physiol, 2016 Oct. PMID 27493213, Free PMC Article
    2. CRISPR/Cas9 edited HSFA6a and HSFA6b of Arabidopsis thaliana offers ABA and osmotic stress insensitivity by modulation of ROS homeostasis. Wenjing W, et al. Plant Signal Behav, 2020 Dec 1. PMID 32936726, Free PMC Article
    3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CRISPR/Cas9 edited HSFA6a and HSFA6b of Arabidopsis thaliana offers ABA and osmotic stress insensitivity by modulation of ROS homeostasis.
      Title: CRISPR/Cas9 edited HSFA6a and HSFA6b of Arabidopsis thaliana offers ABA and osmotic stress insensitivity by modulation of ROS homeostasis.
    2. Data show that heat shock transcription factor A6B (HSFA6b)was required for thermotolerance acquisition.
      Title: The Heat Stress Factor HSFA6b Connects ABA Signaling and ABA-Mediated Heat Responses.
    Submit: New GeneRIF Correction

    General gene information

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    NM_113182.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    heat shock transcription factor A6B
    NP_188922.1
    • heat shock transcription factor A6B (HSFA6B); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8078789..8081059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113182.2 → NP_188922.1  heat shock transcription factor A6B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188922.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUH8
      UniProtKB/TrEMBL
      A0A178VDE3, A0A5S9XER1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUH8.1

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