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    transcriptional regulator ATRX-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822356, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional regulator ATRX-like protein
    Primary source
    TAIR:AT3G27350
    Locus tag
    AT3G27350
    See related
    Araport:AT3G27350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (10125659..10128756)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene Myb domain protein Neighboring gene Hop-interacting protein Neighboring gene Histone superfamily protein Neighboring gene succinate dehydrogenase 2-1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203058.1
    NM_113650.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional regulator ATRX-like protein
    NP_001189987.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1).
    NP_001189988.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1).
    NP_566816.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast hits to 202 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10125659..10128756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203059.1 → NP_001189988.1  transcriptional regulator ATRX-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189988.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XG47, F4IWH1

    2. NM_001203058.1 → NP_001189987.1  transcriptional regulator ATRX-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189987.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XG47, F4IWH3

    3. NM_113650.4 → NP_566816.1  transcriptional regulator ATRX-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566816.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKN5, A0A384L633, A0A5S9XG47, Q9LTZ4
    Nucleotide Protein
    Heading Accession and Version

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