U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NCED5 nine-cis-epoxycarotenoid dioxygenase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839889, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NCED5
    Official Full Name
    nine-cis-epoxycarotenoid dioxygenase 5
    Primary source
    TAIR:AT1G30100
    Locus tag
    AT1G30100
    See related
    Araport:AT1G30100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNCED5; nine-cis-epoxycarotenoid dioxygenase 5; NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5; T2H7.10; T2H7_10
    Summary
    Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NCED5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (10571310..10573365)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene pyruvate dehydrogenase E1 beta Neighboring gene nudix hydrolase homolog 25 Neighboring gene DUF1365 family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Abscisic acid has a key role in modulating diverse plant-pathogen interactions. Fan J, et al. Plant Physiol, 2009 Aug. PMID 19571312, Free PMC Article
    2. Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Frey A, et al. Plant J, 2012 May. PMID 22171989
    3. Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. Tan BC, et al. Plant J, 2003 Jul. PMID 12834401
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NCED5 thus contributes, together with NCED3, to Abscisic acid production affecting plant growth and water stress tolerance.
      Title: Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    NM_102749.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 9-cis-epoxycarotenoid dioxygenase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within abscisic acid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within seed dormancy process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nine-cis-epoxycarotenoid dioxygenase 5
    NP_174302.1
    • nine-cis-epoxycarotenoid dioxygenase 5 (NCED5); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 2 (TAIR:AT4G18350.1); Has 2882 Blast hits to 2845 proteins in 494 species: Archae - 16; Bacteria - 802; Metazoa - 232; Fungi - 202; Plants - 893; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10571310..10573365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102749.3 → NP_174302.1  nine-cis-epoxycarotenoid dioxygenase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174302.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C6Z1
      UniProtKB/TrEMBL
      A0A178WDP3, A0A5S9WD03
      Conserved Domains (1) summary
      PLN02258
      Location:6 → 589
      PLN02258; 9-cis-epoxycarotenoid dioxygenase NCED
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6Z1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools