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    Cofilin/tropomyosin-type actin-binding protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823742, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cofilin/tropomyosin-type actin-binding protein family
    Primary source
    TAIR:AT3G45990
    Locus tag
    AT3G45990
    See related
    Araport:AT3G45990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (16900778..16904136, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene expansin-like A1 Neighboring gene ncRNA Neighboring gene Histone superfamily protein Neighboring gene actin depolymerizing factor 2 Neighboring gene actin depolymerizing factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in actin filament depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Cofilin/tropomyosin-type actin-binding protein family
    NP_190185.1
    • Cofilin/tropomyosin-type actin-binding protein family; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem, embryo, sperm cell; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108), ADF/Cofilin/Destrin (InterPro:IPR017904); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 2 (TAIR:AT3G46000.1); Has 1355 Blast hits to 1354 proteins in 256 species: Archae - 0; Bacteria - 3; Metazoa - 568; Fungi - 135; Plants - 512; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16900778..16904136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114468.1 → NP_190185.1  Cofilin/tropomyosin-type actin-binding protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190185.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZT3
      Conserved Domains (1) summary
      cd11286
      Location:3 → 132
      ADF_cofilin_like; Cofilin, Destrin, and related actin depolymerizing factors
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZT3.1

    Gene LinkOut

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