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    OFP18 ovate family protein 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824420, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OFP18
    Official Full Name
    ovate family protein 18
    Primary source
    TAIR:AT3G52540
    Locus tag
    AT3G52540
    See related
    Araport:AT3G52540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18; ATOFP18; F3C22.1; ovate family protein 18
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    Genomic context

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    See OFP18 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19488546..19489893, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene phosphoglucan phosphatase Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene transcription repressor OFP15-like protein Neighboring gene ubiquitin E2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development. Wang S, et al. PLoS One, 2011. PMID 21886836, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115114.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ovate family protein 18
    NP_566967.1
    • ovate family protein 18 (OFP18); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 15 (TAIR:AT2G36050.1); Has 432 Blast hits to 323 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 90; Fungi - 44; Plants - 215; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19488546..19489893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115114.4 → NP_566967.1  ovate family protein 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566967.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8M7, Q9SVD5
      UniProtKB/TrEMBL
      A0A5S9XK52, A0A654FGV1
      Conserved Domains (1) summary
      cl04796
      Location:137 → 201
      Ovate; Transcriptional repressor, ovate
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVD5.1

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