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    Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825416, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein with RNI-like/FBD-like domain
    Primary source
    TAIR:AT3G62430
    Locus tag
    AT3G62430
    See related
    Araport:AT3G62430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (23093451..23095657, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CP12 domain-containing protein 2 Neighboring gene basic region/leucine zipper motif 53 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene DNA mismatch repair protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116108.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Protein with RNI-like/FBD-like domain
    NP_191802.1
    • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G54160.1); Has 1224 Blast hits to 1202 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23093451..23095657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116108.2 → NP_191802.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191802.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZP7
      UniProtKB/TrEMBL
      A0A178VHL5
      Conserved Domains (3) summary
      smart00579
      Location:363 → 435
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:152 → 181
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZP7.1

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