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    mediator of aba-regulated dormancy protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825496, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of aba-regulated dormancy protein (DUF581)
    Primary source
    TAIR:AT3G63210
    Locus tag
    AT3G63210
    See related
    Araport:AT3G63210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MARD1; MEDIATOR OF ABA-REGULATED DORMANCY 1
    Summary
    encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (23353514..23355480, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PATATIN-like protein 9 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene senescence-associated-like protein (DUF581)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel zinc-finger protein with a proline-rich domain mediates ABA-regulated seed dormancy in Arabidopsis. He Y, et al. Plant Mol Biol, 2004 Jan. PMID 15159630
    2. Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules. Bogamuwa S, et al. PLoS One, 2016. PMID 26978070, Free PMC Article
    3. The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions. Jamsheer K M, et al. J Biol Chem, 2018 Aug 24. PMID 29945970, Free PMC Article
    4. DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction. K MJ, et al. PLoS One, 2014. PMID 24901469, Free PMC Article
    5. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116186.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to mannose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to sucrose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of aba-regulated dormancy protein (DUF581)
    NP_567143.1
    • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23353514..23355480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116186.4 → NP_567143.1  mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LA86, Q8LGS1, Q8VZ84, Q9M1W8
      UniProtKB/TrEMBL
      A0A5S9XN90, A0A654FKC0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LGS1.2

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