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    TBL35 TRICHOME BIREFRINGENCE-LIKE 35 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831716, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL35
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 35
    Primary source
    TAIR:AT5G01620
    Locus tag
    AT5G01620
    See related
    Araport:AT5G01620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.140; F7A7_140; TRICHOME BIREFRINGENCE-LIKE 35
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL35 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (232565..234916)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ferretin 1 Neighboring gene hypothetical protein (Protein of unknown function, DUF538) Neighboring gene BRCA2-like B Neighboring gene prenylated RAB acceptor 1.B5 Neighboring gene Tautomerase/MIF superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Arabidopsis TBL34 and TBL35 in xylan acetylation and plant growth. Yuan Y, et al. Plant Sci, 2016 Feb. PMID 26795157
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203272.1
    NM_180418.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables xylan O-acetyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within xylan biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 35
    NP_001190201.1
    • TRICHOME BIREFRINGENCE-LIKE 35 (TBL35); LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 34 (TAIR:AT2G38320.1).
    NP_568093.1
    • TRICHOME BIREFRINGENCE-LIKE 35 (TBL35); LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 34 (TAIR:AT2G38320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850749.1
    • TRICHOME BIREFRINGENCE-LIKE 35; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 34 (TAIR:AT2G38320.1); Has 1369 Blast hits to 1347 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      232565..234916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120240.1 → NP_568093.1  TRICHOME BIREFRINGENCE-LIKE 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568093.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K9F9, Q8LG69, Q8RXQ1, Q9M014
      UniProtKB/TrEMBL
      A0A178ULB5, A0A5S9Y0G6
      Conserved Domains (2) summary
      pfam13839
      Location:166 → 447
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:108 → 163
      PMR5N; PMR5 N terminal Domain

    2. NM_180418.4 → NP_850749.1  TRICHOME BIREFRINGENCE-LIKE 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850749.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K9F9, Q8LG69, Q8RXQ1, Q9M014
      UniProtKB/TrEMBL
      A0A178ULB5, A0A5S9Y0G6
      Conserved Domains (2) summary
      pfam13839
      Location:166 → 447
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:108 → 163
      PMR5N; PMR5 N terminal Domain

    3. NM_001203272.1 → NP_001190201.1  TRICHOME BIREFRINGENCE-LIKE 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190201.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULB5, A0A5S9Y0G6
      Conserved Domains (2) summary
      pfam13839
      Location:172 → 457
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:117 → 171
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXQ1.1

    Gene LinkOut

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