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    FHL far-red-elongated hypocotyl1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830832, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FHL
    Official Full Name
    far-red-elongated hypocotyl1-like protein
    Primary source
    TAIR:AT5G02200
    Locus tag
    AT5G02200
    See related
    Araport:AT5G02200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    far-red-elongated hypocotyl1-like; T7H20.250; T7H20_250
    Summary
    Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.
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    Genomic context

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    See FHL in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (437365..439019)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene GCK domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FHY1: a phytochrome A-specific signal transducer. Desnos T, et al. Genes Dev, 2001 Nov 15. PMID 11711433, Free PMC Article
    2. Arabidopsis FHY1 and FHY1-LIKE Are Not Required for Phytochrome A Signal Transduction in the Nucleus. Menon C, et al. Plant Commun, 2020 Mar 9. PMID 33404546, Free PMC Article
    3. Missense mutation in the amino terminus of phytochrome A disrupts the nuclear import of the photoreceptor. Sokolova V, et al. Plant Physiol, 2012 Jan. PMID 21969386, Free PMC Article
    4. The histidine kinase-related domain of Arabidopsis phytochrome a controls the spectral sensitivity and the subcellular distribution of the photoreceptor. Müller R, et al. Plant Physiol, 2009 Jul. PMID 19403732, Free PMC Article
    5. Arabidopsis fhl/fhy1 double mutant reveals a distinct cytoplasmic action of phytochrome A. Rösler J, et al. Proc Natl Acad Sci U S A, 2007 Jun 19. PMID 17566111, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis FHY1 and FHY1-LIKE Are Not Required for Phytochrome A Signal Transduction in the Nucleus.
      Title: Arabidopsis FHY1 and FHY1-LIKE Are Not Required for Phytochrome A Signal Transduction in the Nucleus.
    2. FHL interacts directly with phytochrome A.
      Title: Phytochrome A mediates rapid red light-induced phosphorylation of Arabidopsis FAR-RED ELONGATED HYPOCOTYL1 in a low fluence response.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085052.2
    NM_120298.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within maintenance of protein location in nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulatory ncRNA-mediated heterochromatin formation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within response to blue light IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to far red light IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to far red light IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    far-red-elongated hypocotyl1-like protein
    NP_001078521.1
    • far-red-elongated hypocotyl1-like (FHL); FUNCTIONS IN: protein binding; INVOLVED IN: maintenance of protein location in nucleus, response to blue light, response to far red light; LOCATED IN: nuclear speck; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyl 1 (TAIR:AT2G37678.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_195840.1
    • far-red-elongated hypocotyl1-like (FHL); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyl 1 (TAIR:AT2G37678.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      437365..439019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120298.3 → NP_195840.1  far-red-elongated hypocotyl1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195840.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQK8
      Conserved Domains (1) summary
      PLN03104
      Location:1 → 181
      FHL; FAR-RED-ELONGATED HYPOCOTYL1-LIKE; Provisional

    2. NM_001085052.2 → NP_001078521.1  far-red-elongated hypocotyl1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078521.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MR65, D5MAD5, Q9LZL2
      UniProtKB/TrEMBL
      A0A5S9Y126, A0A7G2F4H1
      Conserved Domains (1) summary
      PLN03104
      Location:10 → 201
      FHL; FAR-RED-ELONGATED HYPOCOTYL1-LIKE; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MR65.1

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