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    HB30 homeobox protein 30 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831373, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HB30
    Official Full Name
    homeobox protein 30
    Primary source
    TAIR:AT5G15210
    Locus tag
    AT5G15210
    See related
    Araport:AT5G15210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHB30; F8M21.100; F8M21_100; homeobox protein 30; ZFHD3; ZHD8; ZINC FINGER HOMEODOMAIN 3; ZINC FINGER HOMEODOMAIN 8
    Summary
    Encodes ZFHD3, a member of the zinc finger homeodomain transcriptional factor family.
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    Genomic context

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    See HB30 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (4937465..4939207, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein S4 Neighboring gene Ribosomal protein L27 family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29. Barth O, et al. Plant Mol Biol, 2009 Jan. PMID 18974936
    2. Nuclear import and DNA binding of the ZHD5 transcription factor is modulated by a competitive peptide inhibitor in Arabidopsis. Hong SY, et al. J Biol Chem, 2011 Jan 14. PMID 21059647, Free PMC Article
    3. The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. Tan QK, et al. Plant Physiol, 2006 Mar. PMID 16428600, Free PMC Article
    4. A stele-enriched gene regulatory network in the Arabidopsis root. Brady SM, et al. Mol Syst Biol, 2011 Jan 18. PMID 21245844, Free PMC Article
    5. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121525.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucosinolate metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    homeobox protein 30
    NP_197025.1
    • homeobox protein 30 (HB30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 34 (TAIR:AT3G28920.1); Has 512 Blast hits to 491 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4937465..4939207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121525.4 → NP_197025.1  homeobox protein 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197025.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXG0
      UniProtKB/TrEMBL
      A0A178UMR3, A0A5S9Y546
      Conserved Domains (2) summary
      TIGR01565
      Location:179 → 235
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:56 → 109
      ZF-HD_dimer; ZF-HD protein dimerization region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXG0.1

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