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    NUFIP GATA zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831962, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NUFIP
    Official Full Name
    GATA zinc finger protein
    Primary source
    TAIR:AT5G18440
    Locus tag
    AT5G18440
    See related
    Araport:AT5G18440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNUFIP; F20L16.160; F20L16_160; nuclear FMRP-interacting protein
    Summary
    Encodes NUFIP that directs assembly of C/D snoRNP (small nucleolar ribonucleoprotein).
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    Genomic context

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    See NUFIP in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (6112738..6115932)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene carboxyl-terminal peptidase (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtNUFIP, an essential protein for plant development, reveals the impact of snoRNA gene organisation on the assembly of snoRNPs and rRNA methylation in Arabidopsis thaliana. Rodor J, et al. Plant J, 2011 Mar. PMID 21261762
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtNUFIP is required for plant development and is essential for C/D snoRNA stability.
      Title: AtNUFIP, an essential protein for plant development, reveals the impact of snoRNA gene organisation on the assembly of snoRNPs and rRNA methylation in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001085134.2
    NM_121849.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within small nucleolar ribonucleoprotein complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GATA zinc finger protein
    NP_001078603.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink).
    NP_197345.2
    • CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6112738..6115932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085134.2 → NP_001078603.1  GATA zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078603.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB40, A0A7G2FBQ9, Q5BPJ1
      Conserved Domains (2) summary
      TIGR01628
      Location:33 → 173
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam10453
      Location:241 → 295
      NUFIP1; Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

    2. NM_121849.3 → NP_197345.2  GATA zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197345.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB40, A0A7G2FBQ9, Q5BPJ1
      Conserved Domains (2) summary
      TIGR01628
      Location:33 → 173
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam10453
      Location:241 → 295
      NUFIP1; Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
    Nucleotide Protein
    Heading Accession and Version

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