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    RIP5 ROP interactive partner 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836143, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RIP5
    Official Full Name
    ROP interactive partner 5
    Primary source
    TAIR:AT5G60210
    Locus tag
    AT5G60210
    See related
    Araport:AT5G60210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15L12.15; F15L12_15; ROP interactive partner 5
    Summary
    Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).
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    Genomic context

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    See RIP5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24243009..24247888, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cysteine proteinases superfamily protein Neighboring gene TARGET OF MONOPTEROS 6 Neighboring gene uncharacterized protein Neighboring gene tetraspanin4 Neighboring gene splicing endonuclease 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth. Li S, et al. Mol Plant, 2008 Nov. PMID 19825600, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203650.2
    NM_001345401.1
    NM_001345404.1
    NM_125414.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ROP interactive partner 5
    NP_001190579.1
    • ROP interactive partner 5 (RIP5); BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1).
    NP_001318845.1
    • ROP interactive partner 5 (RIP5); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 98994 Blast hits to 51471 proteins in 2911 species: Archae - 1324; Bacteria - 16057; Metazoa - 45939; Fungi - 8665; Plants - 5713; Viruses - 271; Other Eukaryotes - 21025 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24243009..24247888 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345402.1 → NP_001332512.1  ROP interactive partner 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFS0, A0A1P8BH66, A0A5S9YFR1
      Conserved Domains (1) summary
      TIGR02168
      Location:95 → 455
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001345403.1 → NP_001332510.1  ROP interactive partner 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ47, Q9LSS5
      UniProtKB/TrEMBL
      A0A178UFS0, A0A5S9YFR1, A0A654GDS7
      Conserved Domains (1) summary
      TIGR02168
      Location:71 → 431
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. NM_001203650.2 → NP_001190579.1  ROP interactive partner 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190579.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ47, Q9LSS5
      UniProtKB/TrEMBL
      A0A178UFS0, A0A5S9YFR1, A0A654GDS7
      Conserved Domains (1) summary
      TIGR02168
      Location:71 → 431
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001345404.1 → NP_001332511.1  ROP interactive partner 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFS0, A0A1P8BH66, A0A5S9YFR1
      Conserved Domains (1) summary
      TIGR02168
      Location:95 → 455
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. NM_001345401.1 → NP_001318845.1  ROP interactive partner 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ47, Q9LSS5
      UniProtKB/TrEMBL
      A0A178UFS0, A0A5S9YFR1, A0A654GDS7
      Conserved Domains (1) summary
      TIGR02168
      Location:71 → 431
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. NM_125414.6 → NP_200829.5  ROP interactive partner 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200829.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ47, Q9LSS5
      UniProtKB/TrEMBL
      A0A178UFS0, A0A5S9YFR1, A0A654GDS7
      Conserved Domains (1) summary
      TIGR02168
      Location:71 → 431
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSS5.1

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