U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SWIB/MDM2 and Plus-3 and GYF domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830742, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    SWIB/MDM2 and Plus-3 and GYF domain-containing protein
    Primary source
    TAIR:AT5G08430
    Locus tag
    AT5G08430
    See related
    Araport:AT5G08430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.160; F8L15_160
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (2716313..2720442)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Radical SAM superfamily protein Neighboring gene ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 Neighboring gene RNA-binding KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene zinc finger CCCH domain protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001343000.1
    NM_120928.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SWIB/MDM2 and Plus-3 and GYF domain-containing protein
    NP_196460.2
    • SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2716313..2720442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120928.3 → NP_196460.2  SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196460.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT92
      UniProtKB/TrEMBL
      A0A178UHJ5, A0A384KD33, A0A5S9Y2J0, B3LFA6
      Conserved Domains (3) summary
      smart00719
      Location:150 → 251
      Plus3; Short conserved domain in transcriptional regulators
      cd00855
      Location:34 → 106
      SWIB-MDM2; SWIB/MDM2 domain family
      cl00072
      Location:500 → 552
      GYF; GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.

    2. NM_001343000.1 → NP_001331259.1  SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDA8
      Conserved Domains (2) summary
      smart00719
      Location:150 → 251
      Plus3; Short conserved domain in transcriptional regulators
      cd00855
      Location:34 → 106
      SWIB-MDM2; SWIB/MDM2 domain family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT92.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.