U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SLK1 SEUSS-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828657, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SLK1
    Official Full Name
    SEUSS-like 1
    Primary source
    TAIR:AT4G25520
    Locus tag
    AT4G25520
    See related
    Araport:AT4G25520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M7J2.110; M7J2_110; SEUSS-like 1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SLK1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (13032157..13036471, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene SEUSS-like 3 Neighboring gene FLOWERING WAGENINGEN Neighboring gene homolog of DNA mismatch repair protein MSH3 Neighboring gene Cleavage/polyadenylation specificity factor, 25kDa subunit

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis. Bao F, et al. Plant Physiol, 2010 Feb. PMID 20007451, Free PMC Article
    2. Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis. Shrestha B, et al. BMC Plant Biol, 2014 Feb 24. PMID 24564815, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. that SLK1, SLK2 and LUH form a co-repressor complex.
      Title: Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis.
    2. SLK1 shares redundant function with SEU during gynoecium and ovule development. SEU and SLK1 are required for optimal auxin signaling during root and gynoecial development.
      Title: SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001341749.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gynoecium development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant ovule development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SEUSS-like 1
    NP_001320064.1
    • SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13032157..13036471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118684.9 → NP_194282.2  SEUSS-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194282.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65609, Q0WVM7, Q9M0K8
      UniProtKB/TrEMBL
      A0A178UY11, A0A5S9XVR6, A0A654FST1
      Conserved Domains (1) summary
      pfam01803
      Location:192 → 452
      LIM_bind; LIM-domain binding protein

    2. NM_001341749.1 → NP_001320064.1  SEUSS-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65609, Q0WVM7, Q9M0K8
      UniProtKB/TrEMBL
      A0A178UY11, A0A5S9XVR6, A0A654FST1
      Conserved Domains (1) summary
      pfam01803
      Location:192 → 452
      LIM_bind; LIM-domain binding protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WVM7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools