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    CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831119, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
    Primary source
    TAIR:AT5G12440
    Locus tag
    AT5G12440
    See related
    Araport:AT5G12440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (4035181..4042254, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene FBD-like domain family protein Neighboring gene fringe-like protein (DUF604) Neighboring gene UvrABC system C protein, putative (DUF3411)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203367.1
    NM_001343238.1
    NM_001343239.1
    NM_001343240.1
    NM_001343241.1
    NM_001343242.1
    NM_001343243.1
    NM_001343244.1
    NM_001343245.1
    NM_001343246.1
    NM_001343247.1
    NM_121282.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
    NP_001318550.1
    • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2).
    NP_001318551.1
    • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2).
    NP_568277.5
    • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2); Has 264 Blast hits to 227 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 228; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4035181..4042254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121282.6 → NP_568277.5  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568277.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    2. NM_001343246.1 → NP_001332064.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW7, A0A654G0X5

    3. NM_001343245.1 → NP_001332065.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    4. NM_001343244.1 → NP_001332066.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW7, A0A654G0X5

    5. NM_001343242.1 → NP_001332068.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    6. NM_001343243.1 → NP_001332067.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW7, A0A654G0X5

    7. NM_001343240.1 → NP_001318550.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    8. NM_001343239.1 → NP_001332061.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    9. NM_001343238.1 → NP_001332062.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW7, A0A654G0X5

    10. NM_001343247.1 → NP_001332063.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    11. NM_001343241.1 → NP_001318551.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW7, A0A654G0X5

    12. NM_001203367.1 → NP_001190296.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190296.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GS07, Q94CJ8
      UniProtKB/TrEMBL
      A0A178UC57, A0A5S9Y460
      Conserved Domains (2) summary
      smart00356
      Location:231 → 252
      ZnF_C3H1; zinc finger
      cd12458
      Location:359 → 428
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CJ8.3

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