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    Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828142, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
    Primary source
    TAIR:AT4G02100
    Locus tag
    AT4G02100
    See related
    Araport:AT4G02100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10M13.11; T10M13_11
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (929869..932397)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene multidrug resistance protein ABC transporter family protein Neighboring gene secretion-associated RAS super family 2 Neighboring gene transcription coactivator Neighboring gene CTP synthase family protein Neighboring gene galacturonosyltransferase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116442.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
    NP_192119.2
    • Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 318 Blast hits to 309 proteins in 95 species: Archae - 0; Bacteria - 4; Metazoa - 68; Fungi - 63; Plants - 160; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      929869..932397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116442.3 → NP_192119.2  Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192119.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTC1, A0A654FL52, Q84VX5
      Conserved Domains (2) summary
      smart00271
      Location:391 → 426
      DnaJ; DnaJ molecular chaperone homology domain
      sd00006
      Location:276 → 306
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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