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    LBD15 LOB domain-containing protein 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818641, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD15
    Official Full Name
    LOB domain-containing protein 15
    Primary source
    TAIR:AT2G40470
    Locus tag
    AT2G40470
    See related
    Araport:AT2G40470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASL11; ASYMMETRIC LEAVES2-LIKE 11; LOB domain-containing protein 15; T2P4.18; T2P4_18
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    Genomic context

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    See LBD15 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16902038..16904032, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene uncharacterized protein Neighboring gene WEB family protein (DUF827)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis. Sun SB, et al. Mol Biol Rep, 2010 Dec. PMID 20306306
    2. The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression. Guo Z, et al. Plant J, 2020 Oct. PMID 32744432
    3. LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Ohashi-Ito K, et al. Plant Cell Physiol, 2018 May 1. PMID 29444288
    4. Arabidopsis ASL11/LBD15 is involved in shoot apical meristem development and regulates WUS expression. Sun X, et al. Planta, 2013 May. PMID 23397191
    5. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression.
      Title: The Arabidopsis transcription factor LBD15 mediates ABA signaling and tolerance of water-deficit stress by regulating ABI4 expression.
    2. AtGLR3.4-mediated Ca2+ influx may be involved in the regulation of seed germination under salt stress
      Title: LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    3. Results suggest that ASL11/LBD15 affects cellular differentiation in the SAM and regulates WUS expression.
      Title: Arabidopsis ASL11/LBD15 is involved in shoot apical meristem development and regulates WUS expression.
    4. ASL11 might be involved in sustaining indeterminate cell fate of shoot apical meristems. [ASL11]
      Title: Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001336841.1
    NM_129608.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within tracheary element differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 15
    NP_565933.1
    • LOB domain-containing protein 15 (LBD15); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 13 (TAIR:AT2G30340.1); Has 1010 Blast hits to 1005 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1006; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16902038..16904032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129608.3 → NP_565933.1  LOB domain-containing protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565933.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MES9, B7XG65, O22888, Q1PEV4, Q8L5T5
      UniProtKB/TrEMBL
      A0A178VSB7, A0A5S9X5Q8, A0A7G2EH29
      Conserved Domains (1) summary
      pfam03195
      Location:45 → 125
      LOB; Lateral organ boundaries (LOB) domain

    2. NM_001336841.1 → NP_001324899.1  LOB domain-containing protein 15 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1I4, A0A7G2EH29
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L5T5.2

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