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    ARPC1B actin-related protein C1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817687, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARPC1B
    Official Full Name
    actin-related protein C1B
    Primary source
    TAIR:AT2G31300
    Locus tag
    AT2G31300
    See related
    Araport:AT2G31300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ACTIN-RELATED PROTEIN C1; actin-related protein C1B; ARPC1; F16D14.14; F16D14_14
    Summary
    putative ARP2/3 protein complex subunit p41
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    Genomic context

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    See ARPC1B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Sequence:
    Chromosome: 2; NC_003071.7 (13345977..13350004, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CDT1-like protein A Neighboring gene transcription factor bHLH155-like protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene ncRNA Neighboring gene inhibitor-3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Breaking the WAVE complex: the point of Arabidopsis trichomes. Szymanski DB. Curr Opin Plant Biol, 2005 Feb. PMID 15653407
    2. The actin cytoskeleton is required to elaborate and maintain spatial patterning during trichome cell morphogenesis in Arabidopsis thaliana. Mathur J, et al. Development, 1999 Dec. PMID 10572033
    3. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Van Damme D, et al. Plant J, 2004 Nov. PMID 15469496
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128686.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within actin filament organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Arp2/3 protein complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    actin-related protein C1B
    NP_180688.1
    • actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13345977..13350004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336326.1 → NP_001323442.1  actin-related protein C1B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX56, A0A5S9X2V2

    2. NM_128686.3 → NP_180688.1  actin-related protein C1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180688.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJW6
      UniProtKB/TrEMBL
      A0A5S9X2V2
      Conserved Domains (3) summary
      COG2319
      Location:14 → 174
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:13 → 53
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:48 → 369
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJW6.1

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