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    Transcriptional factor B3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829296, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcriptional factor B3 family protein
    Primary source
    TAIR:AT4G31680
    Locus tag
    AT4G31680
    See related
    Araport:AT4G31680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M20.130; F28M20_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (15340260..15342081, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene ubiquitin-specific protease 18 Neighboring gene transcriptional factor B3 family protein Neighboring gene transcriptional factor B3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119317.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcriptional factor B3 family protein
    NP_194896.2
    • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31690.1); Has 640 Blast hits to 410 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15340260..15342081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342103.1 → NP_001329279.1  Transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B798, A0A5S9XXQ6, A0A654FUY1

    2. NM_119317.3 → NP_194896.2  Transcriptional factor B3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194896.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81779, Q8H2D1
      UniProtKB/TrEMBL
      A0A5S9XXQ6, A0A654FUY1
      Conserved Domains (2) summary
      smart01019
      Location:153 → 243
      B3; B3 DNA binding domain
      cl00483
      Location:344 → 410
      UDG_like; Uracil-DNA glycosylases (UDG) and related enzymes
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H2D1.1

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